Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

A

AIC() (in Discriminator)	AICc() (in Discriminator)	assignFunctionNames() (in CpsHandler)

B

buildReverseMacros() (in modelmage)

C

checkCompartment() (in Generator)	checkReactionIds() (in kineticHandler)	convert() (in unCellDesign)
checkPartOfModel() (in kineticHandler)	cleanResult() (in modelmage)	CpsHandler (in modelmage.generator)

D

DG (in Generator)	discriminator (in modelmage)
discriminate() (in ModelMaGe)	Discriminator (in modelmage.discriminator)

E

Error (in modelmage.mmexceptions)	estimateParameters() (in ModelMaGe)

F

filename (in Model)	functions (in Model)

G

generate() (in ModelMaGe)	getFunction_Id_Name_XML() (in ModelMaGe)	getModel() (in Generator)
generate() (in Generator)	getGraph() (in Model)	getModelElement() (in Model)
generator (in modelmage)	getGraphHistory() (in Generator)	getNameIdMap() (in Model)
Generator (in modelmage.generator)	getIdNameMap() (in Model)	getNewFilename() (in Model)
generatorError (in modelmage.mmexceptions)	getInvalidIds() (in kineticHandler)	getNonModelIds() (in kineticHandler)
getArgs() (in Initializer)	getKinetics() (in kineticHandler)	getRanking() (in Discriminator)
getCandidateSBMLFunctions() (in ModelMaGe)	getMasterModel() (in ModelMaGe)	getSbmlDocument() (in Model)
getChangedDG() (in Generator)	getMasterModelReactions() (in ModelMaGe)	getStoich() (in Generator)
getExperimentalDataFiles() (in CpsHandler)	getMasterModelSpecies() (in ModelMaGe)	getStoich() (in Model)
getFilename() (in ModelMaGe)	getMasterSBMLFunctions() (in ModelMaGe)	getTrueCombinations() (in removeHandler)

H

history (in Model)

I

importTask() (in CpsHandler)	InputError (in modelmage.mmexceptions)	isCellDesign() (in unCellDesign)
Initializer (in modelmage.preparator)	inspectKineticLaw() (in Model)

K

kineticHandler (in modelmage.preparator)	kinetics (in Generator)

L

libSBMLError (in modelmage.mmexceptions)

M

main() (in modelmage.discriminator)	model (in modelmage)	ModelMaGe (in modelmage)
main() (in modelmage)	Model
mmexceptions (in modelmage)	modelmage

P

possibleKinetics (in Generator)	preparator (in modelmage)	printReactionsSpecies() (in Generator)

R

reactionFunctions (in Model)	readSBML() (in Model)	ResultsCopasi (in modelmage)
reactionId (in Model)	removeHandler (in modelmage.preparator)	ResultsSBML (in modelmage)
reactionSubPar (in Model)	removeNode() (in Generator)

S

setGraphHistory() (in Generator)	setSbmlDocument() (in Model)	setStoich() (in Model)
setMasterModel() (in ModelMaGe)	setStoich() (in Generator)	speciesId (in Model)

T

transferData() (in ModelMaGe)

U

unCellDesign (in modelmage)	unCellDesign	Update_tasks_cps() (in ModelMaGe)

V

verbose (in ModelMaGe)	Version (in modelmage)

W

write() (in unCellDesign)	writeCPS() (in CpsHandler)	writeSBML() (in Model)

_

__addFitItem() (in CpsHandler)	__getReactionNames() (in CpsHandler)	__package__ (in modelmage)
__all_combinations() (in removeHandler)	__getReactionParameters() (in CpsHandler)	__package__ (in modelmage.discriminator)
__buildGraph() (in Model)	__getReport() (in CpsHandler)	__package__ (in modelmage.generator)
__buildMaps() (in Model)	__getTask() (in CpsHandler)	__package__ (in modelmage.mmexceptions)
__changedDG (in Generator)	__graph (in Model)	__package__ (in modelmage.model)
__checkConsistentReverseMacros() (in Generator)	__graphHistory (in Generator)	__package__ (in modelmage.preparator)
__checkSelfLoop() (in Generator)	__idNameMap (in Model)	__package__ (in modelmage.unCellDesign)
__combine() (in Generator)	__init__() (in ModelMaGe)	__removeExperimentalPar() (in CpsHandler)
__createKineticSBML() (in Generator)	__init__() (in Discriminator)	__removeModifier() (in Generator)
__createStructureSBML() (in Generator)	__init__() (in CpsHandler)	__removeReaction() (in Generator)
__createValueDict() (in CpsHandler)	__init__() (in Generator)	__removeSpecies() (in Generator)
__encodeAttributes() (in CpsHandler)	__init__() (in InputError)	__removeTags() (in unCellDesign)
__findStructureKinetics() (in Generator)	__init__() (in generatorError)	__sbmlDocument (in Model)
__fitItem() (in CpsHandler)	__init__() (in libSBMLError)	__stoich (in Generator)
__getExperimentalData() (in CpsHandler)	__init__() (in Model)	__stoich (in Model)
__getFitItems() (in CpsHandler)	__init__() (in Initializer)	__true_combinations() (in removeHandler)
__getGlobalParameters() (in CpsHandler)	__init__() (in kineticHandler)	__unique() (in removeHandler)
__getKineticsFromModel() (in kineticHandler)	__init__() (in removeHandler)	__updateReaction() (in Generator)
__getKineticsFromString() (in kineticHandler)	__init__() (in unCellDesign)	__warningregistry__ (in modelmage.generator)
__getMetaboliteIds() (in CpsHandler)	__lawToSBML() (in Generator)	_getLastResult() (in Discriminator)
__getMetaboliteNames() (in CpsHandler)	__masterModel (in ModelMaGe)	_getNumberOfObservations() (in Discriminator)
__getModelValues() (in CpsHandler)	__nameIdMap (in Model)	_getNumberOfParameters() (in Discriminator)
__getReactionIds() (in CpsHandler)	__names2Ids() (in removeHandler)	_getObjectiveValue() (in Discriminator)