Theses
PhD theses
Master theses
| 2020 | |
| Martin Seeger | |
| 2018 | |
| Patrick Brunner | |
| 2018 | |
| David Bierbrauer | |
| Marius Jessen | |
| Xuesong Wang | |
| 2017 | |
| Wiebke Schmidt | Visualization of spindle assembly checkpoint activation in budding yeast using YFP-tagged Mad2 |
| Laura Stumpf | Mathematical modeling of TNF-a-induced signaling pathway |
| Jorin Diemer | Decryption of the journey of sperm: a three dimensional agent based model |
| Stefan Forgó | Räumliche Modellierung der Zellwandmechanik und Signalübertragung am Beispiel der Feromonantwort von Saccharomyces cerevisiae |
| Marie Hemmen |
A quantitative description of the mating morphology of Saccharomyces cerevisiae
|
| 2015 | |
| Vera Schützhold | Mathematical modeling of the lipid metabolism in yeast |
| 2014 | |
| Rubén Vázquez Uribe | Modeling of the TOR pathway in the stress response of Saccharomyces cerevisiae |
| Ali Saitov | Biomass Backtracking - Testing and validation |
| 2013 | |
| Jens Hahn | Implementation of a simulation environment for the successive integration of mathematical models for cellular processes exemplified for central carbon metabolism in yeast |
| 2012 | |
| Arturo Blázquez Navarro | Drug target identification for potential diseases using mathematical models |
| Matthias Bock | Mitophagy in yeast, an autophagic process of intracellular organelle quality control |
| Gady Goldsobel | Computational modelling and analysis of the baker’s yeast multi-branch HOG pathway |
| Adriana Supady | Mathematical modeling of synthetic logic gates in S. cerevisiae |
| Ábel Vértesy | Mapping and modeling genetic and morphological pheromone response infission yeast |
| 2010 | |
| Timo Lubitz | Parameter balancing in kinetic models |
| 2009 | |
| Jian Li | Creation of an online phenological database of the 20th century in Germany for analysis and prediction of global change issues |
| Wai-Cheung Ng | Mathematical modeling of the regulation of osmotic pressure in Saccharomyces cerevisiae |
| Jannis Uhlendorf | Prediction of optimal enzymatic regulation architectures |
| 2008 | |
| Max Flöttmann | Automated model generation for osmoregulation in Saccharomyces cerevisiae with ModelMaGe |
| Falko Krause | semanticSBML a tool for creating, checking, annotating and merging of SBML documents |
| Thomas Spiesser | Modeling DNA replication in Saccharomyces cerevisiae |
| 2006 | |
| Clemens Kühn | Mathematical modeling of a sea urchin rene regulatory network |
| Judith Wodke | Qualitative modelling of the human cell cycle |
| 2005 | |
| Sebastian Schmeier | Automated recognition and extraction of entities related to enzyme kinetics from text |
Diploma theses
| 2014 | |
| Gregor Milicic | Zeitschrittverfahren für gekoppelte Reaktions-Diffusionsgleichungen mit Anwendungen in der Biophysik |
| 2012 | |
| André Dautcourt | Modelling ROS production by respiratory chain complex I |
| Katja Tummler | Dynamic modeling of the central carbon metabolism of Mycobacterium tuberculosis |
| 2011 | |
| Wolfgang Giese | Numerische Behandlung einer linearen Reaktions-Diffusions-Gleichung mit einer Anwendung in der interzellulären Kommunikation bei Hefezellen October 2011 - For his diploma thesis Wolfgang Giese was awarded the "Humboldt-Preis" |
| 2010 | |
| Till Scharp | Mathematical modeling of stem cell reprogramming |
| Nadine Töpfer | Optimisation of enzym profiles in metabolic pathways |
| Ludwig Weh | Analysis of elementary networks and topological motifs in the cell cycle |
| 2008 | |
| Margit Heiske | Modelling of the respiratory chainMoritz KrogA systems biology approach to mathematical modelling of the Snf1 glucose sensing pathway in Saccharomyces cerevisiae |
| Moritz Krog | A systems biology approach to mathematical modelling of the Snf1 glucose sensing pathway in Saccharomyces cerevisiae |
| 2006 | |
| Anselm Helbig | Modelling the Tor pathway in Saccharomyces cerevisiae |
| 2004 | |
| Bente Kofahl | Mathematische Modellierung von Signaltransduktionswegen in Hefe Saccharomyces cerevisiae |
| 2001 | |
| Heike Aßmus | An approach to network-based selectivity of anti-parasitic inhibitorsRoland KrügerModellierung der Signaltransduktion infolge von hyperosmotischem Stress in Hefezellen |
| Roland Krüger | Modellierung der Signaltransduktion infolge von hyperosmotischem Stress in Hefezellen |
Bachelor theses
| 2021 | |
| Erich Weisheim | |
| Louis Polczynski | |
| Jonas Küttner | |
| 2020 | |
| Lasse Bonn | |
| Johanna Haffner | |
| Dominik Kranz | |
| Hannah Prawitz | |
| 2019 | |
| Konstantin Holzhausen | |
| Jan Niklas Piotraschke | |
| Jana Hild | |
| Paul Buttkus | |
| Dimitri Schumacher | |
| Jonathan Grill | |
| 2018 | |
| Pascal Iversen | |
| Katharina Ledebur-Wicheln | |
| Rebecca Prinz | |
| Julia Seidel | |
| 2017 | |
| Mathias Wajnberg | Petri Net Modelling of Regulatory Network Data Using the rxncon Framework |
| Robin Helling | Translation of CellDesigner SBML to the rxncon language: turning large network maps into executable models |
| 2016 | |
| Maxim Karnetzki | Biofilms: modeling approach for growth and spatial-separation |
| 2015 | |
| Felix Fauer | Territorial Pattern Formation of Wild Pike - Modellierungsansatz zur Entstehung von Territorien bei wilden Hechten |
| Jorin Diemer | Competition between viral and human protein synthesis during Influenza A virus infection |
| Adrian Zachariae | A mathematical model linking oscillatory gene expression in Mycobacterium tuberculosis with DNA supercoiling |
| 2014 | |
| Maria Dost | A model of the Ras/Raf/Mek/Erk pathway in Rxncon |
| Mareike Simon | Dynamic modeling of the central carbon metabolism of HEK293 cells using Parameter Balancing |
| 2013 | |
| Phillipp Schmidt | SBLink - A web based tool for accessing scientific spreadsheet data |
| 2012 | |
| Stephan Adler | Single Cell and Population Modeling of the G1 network to explore growth, division and structural aspects in diverse budding yeast cultures |
| Lydia Farack | ON/OFF: Insights into epigenetic regulation of gene silencing during human cell differentiation |
| Jens Hahn | Arsenate replacing phosphate in yeast glycolysis |
| 2011 | |
| Helena Steinocher | Mathematische Modellierung der Replikationsinitiation in Mycobacterium TuberculosisMartin WeilandModellierung und Simulation der mitogen-aktivierten Protein-Kinasen-Kaskade zur Untersuchung des Feedbacks der Phosphatase der 3. Stufe auf die aktivierte Kinase der 1. Stufe der Kaskade |
| Martin Weiland | Modellierung und Simulation der mitogen-aktivierten Protein-Kinasen-Kaskade zur Untersuchung des des Feedbacks der Phosphatase der 3. Stufe auf die aktivierte Kinase der 1. Stufe der Kaskade |
| 2010 | |
| Claudia Beck | Stochasic modelling of the G1/S transition in the S. cerevisiae cell cycleFelix NoeskeModellierung der Ausbildung des OXPHOS SuperkomplexesSebastian UllrichModellierung des mitochondrialen Superoxidabbaus in Podospera anserinaChang YanAuswirkung von Konzentrationsänderungen bindender Proteine auf die Komplexbildung |
| Felix Noeske | Modellierung der Ausbildung des OXPHOS Superkomplexes |
| Sebastian Ullrich | Modellierung des mitochondrialen Superoxidabbaus in Podospera anserina |
| Chang Yan | Auswirkung von Konzentrationsänderungen bindender Proteine auf die Komplexbildung |
| 2009 | |
| Anna Kosenko | Combination of mathematical models of signaling pathways |
| Adriana Supady | Theoretical and computational analysis of negative feedback mechanisms and the dose-response alignment in the pheromone signalling pathway of the yeast Saccharomyces cerevisiae |
| 2008 | |
| Kai Kruse | Vergleich der Synthesekapazitätsanalyse von Fluss-Balance-Analyse und Network Expansion |
| 2007 | |
| Christian Diener | Spatiotemporal simulations for the pheromone signaling pathway in MATa cells of Saccharomyces cerevisiae |
| 2006 | |
| Marvin Schulz | Dimension reduction of biochemical network models: implementation and comparison of different algorithms |
| Jannis Uhlendorf | Development of a mathematical model for the occupancy of mRNA with ribosomes in Saccharomyces cerevisiae |
| 2004 | |
| Christof Daniel Robert Dehme | Exakte stochastische Simulation der Genexpression bei hyperosmotischen Schockzuständen in Saccharomyces cerevisiaeStephan MenzVergleich einer deterministischen und stochastischen Modellierung des Hog Signalweges von S. cerevisiae zur Simulation eines hyperosmotischen Schocks |
| Stephan Menz | Vergleich einer deterministischen und stochastischen Modellierung des Hog Signalweges von S. cerevisiae zur Simulation eines hyperosmotischen Schocks |
| Susanne Gerber | Theoretische Untersuchung zur Wirkung von Inhibitoren in Abhängigkeit von ihrem Angriffsort im metabolischen Netzwerk und ihrem Typ |
| 2003 | |
| Sebastian Schmeier | Klassifizierung von biochemischen Texten mittels statistischer Lernverfahren |